%global packname msm
%global packrel 1

Name:             R-%{packname}
Version:          0.8.2
Release:          1%{?dist}
Source0:          ftp://cran.r-project.org/pub/R/contrib/main/%{packname}_%{version}.tar.gz
License:          GPLv2
URL:              http://cran.r-project.org/src/contrib
Group:            Applications/Engineering
Summary:          Multi-state Markov and hidden Markov models in continuous time
BuildRequires:    R-devel, tetex-latex, R-mvtnorm
BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
Requires(post):   R
Requires(postun): R
Requires:         R

%description
Functions for fitting general continuous-time Markov and hidden Markov
multi-state models to longitudinal data.  Both Markov transition rates
and the hidden Markov output process can be modelled in terms of
covariates.  A variety of observation schemes are supported, including
processes observed at arbitrary times, completely-observed processes,
and censored states.

%prep
%setup -q -c -n %{packname}
# Fix some permissions and formats
# find . -type f -perm 755 -exec chmod 644 {} \;
find . -type f -name '*.[hc]' -exec chmod 644 {} \;
# Fix the encoding of the NEWS file
chmod 644 %{packname}/inst/NEWS
iconv -f ISO88591 -t UTF8 -o NEWS %{packname}/inst/NEWS
mv -f NEWS %{packname}/inst

%build

%install
rm -rf $RPM_BUILD_ROOT
mkdir -p $RPM_BUILD_ROOT%{_libdir}/R/library
%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf $RPM_BUILD_ROOT%{_libdir}/R/library/R.css
# find ./doc -type f -perm 755 -exec chmod 644 {} \;

%check
#%%{_bindir}/R CMD check %{packname}

%clean
rm -rf $RPM_BUILD_ROOT

%post -p
%{_R_make_search_index}

%postun -p
%{_R_make_search_index}

%files
%defattr(-, root, root, -)
%dir %{_libdir}/R/library/%{packname}
%doc %{_libdir}/R/library/%{packname}/latex
%doc %{_libdir}/R/library/%{packname}/data
%doc %{_libdir}/R/library/%{packname}/doc
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/man
%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/NEWS
%{_libdir}/R/library/%{packname}/CONTENTS
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/NAMESPACE
%{_libdir}/R/library/%{packname}/Meta
%{_libdir}/R/library/%{packname}/R
%{_libdir}/R/library/%{packname}/R-ex
%{_libdir}/R/library/%{packname}/help
%{_libdir}/R/library/%{packname}/libs/%{packname}.so

%changelog
* Sun May 03 2009 Denis Arnaud <denis.arnaud_fedora@m4x.org> 0.8.2-1
- Initial package creation